species:   Drmel
pid:       MI0005869
parent:    dme-mir-1008
paralog:   
locus:     NT_033778.4:10885533-10885589
matures:   ['UCACAGCUUUUUGUGUUUACA', 'UAAAUAUCUAAAGUUGAACU']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033778.4:10885533-10885589

1 out of bounds
49 alignments
49 proper strand
48 stranded perfect matches

*********************            ************************
GUAAAUAUCUAAAGUUGAACUUGGCCAAUGGCAAGUCACAGCUUUUUGUGUUUACAG
((((((((..(((((((.(((((.((...)))))))..)))))))..))))))))..
-----------------------------------UCACAGCUUUUUGUGUUUACA- l=21 a=1 c
-UAAAUAUCUAAAGUUGAACU------------------------------------ l=20 a=0 c*
-----------------------------------UCACAGCUUUUUGUGUUUACAG l=22 a=31 ma
GUAAAUAUCUAAAGUUGAACU------------------------------------ l=21 a=11 ma*

GUAAAUAUCUAAAGUUGAAC------------------------------------- l=20 a=1 
GUAAAUAUCUAAAGUUGAACU------------------------------------ l=21 a=11 (ma*)
GUAAAUAUCUAAAGUUGAACUUGGC-------------------------------- l=25 a=1 
GUAAAUAUCUAAAGUUGAACUUGGCC------------------------------- l=26 a=2 
--------gUAAAGUUGAACUUGGCC------------------------------- l=18 a=1 
-------------------CUUGGCCAAUGGCAAGUCACAGCUUUUUGU-------- l=30 a=1 
-----------------------------------UCACAGCUUUUUGUGUUUACA- l=21 a=1 (c)
-----------------------------------UCACAGCUUUUUGUGUUUACAG l=22 a=31 (ma)

mb-11111
ax-1111111
ku-01
ss-111111111111
fn-111
